{ "openapi": "3.0.1", "info": { "title": "Molecular Evidence Pack Builder", "description": "Build a bounded, verified molecular evidence dossier from declared public identifiers.", "version": "0.1", "x-build-id": "pnRFMv0afjyBMtFgE" }, "servers": [ { "url": "https://api.apify.com/v2" } ], "paths": { "/acts/flintglade~molecular-evidence-pack-builder/run-sync-get-dataset-items": { "post": { "operationId": "run-sync-get-dataset-items-flintglade-molecular-evidence-pack-builder", "x-openai-isConsequential": false, "summary": "Executes an Actor, waits for its completion, and returns Actor's dataset items in response.", "tags": [ "Run Actor" ], "requestBody": { "required": true, "content": { "application/json": { "schema": { "$ref": "#/components/schemas/inputSchema" } } } }, "parameters": [ { "name": "token", "in": "query", "required": true, "schema": { "type": "string" }, "description": "Enter your Apify token here" } ], "responses": { "200": { "description": "OK" } } } }, "/acts/flintglade~molecular-evidence-pack-builder/runs": { "post": { "operationId": "runs-sync-flintglade-molecular-evidence-pack-builder", "x-openai-isConsequential": false, "summary": "Executes an Actor and returns information about the initiated run in response.", "tags": [ "Run Actor" ], "requestBody": { "required": true, "content": { "application/json": { "schema": { "$ref": "#/components/schemas/inputSchema" } } } }, "parameters": [ { "name": "token", "in": "query", "required": true, "schema": { "type": "string" }, "description": "Enter your Apify token here" } ], "responses": { "200": { "description": "OK", "content": { "application/json": { "schema": { "$ref": "#/components/schemas/runsResponseSchema" } } } } } } }, "/acts/flintglade~molecular-evidence-pack-builder/run-sync": { "post": { "operationId": "run-sync-flintglade-molecular-evidence-pack-builder", "x-openai-isConsequential": false, "summary": "Executes an Actor, waits for completion, and returns the OUTPUT from Key-value store in response.", "tags": [ "Run Actor" ], "requestBody": { "required": true, "content": { "application/json": { "schema": { "$ref": "#/components/schemas/inputSchema" } } } }, "parameters": [ { "name": "token", "in": "query", "required": true, "schema": { "type": "string" }, "description": "Enter your Apify token here" } ], "responses": { "200": { "description": "OK" } } } } }, "components": { "schemas": { "inputSchema": { "type": "object", "required": [ "family" ], "properties": { "inputSchemaVersion": { "title": "Input schema version", "minimum": 1, "maximum": 1, "type": "integer", "description": "Runtime contract version; does not trigger source calls or affect cost.", "default": 1 }, "family": { "title": "Bounded protein or enzyme family", "required": [ "name", "targetIdentifiers", "inclusionRules", "exclusionRules" ], "type": "object", "description": "Required declared family scope. Each target triggers bounded UniProt and, when requested, structure-source reads. At most 25 public targets; retained in the dossier.", "properties": { "name": { "type": "string", "title": "Family name", "description": "A user label retained in outputs; 1-200 characters, for example Flintglade demo family.", "minLength": 1, "maxLength": 200 }, "targetIdentifiers": { "type": "array", "title": "Declared public targets", "description": "1-25 exact UniProt accessions. Optional ChEMBL target IDs are required for bounded bioactivity queries and are checked against source evidence.", "minItems": 1, "maxItems": 25, "items": { "type": "object", "additionalProperties": false, "properties": { "uniprotId": { "type": "string", "title": "UniProt accession", "description": "Exact public UniProtKB accession, for example P69905.", "pattern": "^[A-Za-z0-9]{6,10}$", "minLength": 6, "maxLength": 10 }, "chemblTargetId": { "type": "string", "title": "ChEMBL target ID", "description": "Optional exact ChEMBL target ID for bioactivity, for example CHEMBL2093866.", "pattern": "^CHEMBL[0-9]+$", "maxLength": 30 } }, "required": [ "uniprotId" ] } }, "inclusionRules": { "type": "array", "title": "Inclusion rules", "description": "1-25 explicit rules retained verbatim; each is at most 500 characters.", "minItems": 1, "maxItems": 25, "items": { "type": "string", "minLength": 1, "maxLength": 500 } }, "exclusionRules": { "type": "array", "title": "Exclusion rules", "description": "1-25 explicit exclusions retained verbatim; each is at most 500 characters.", "minItems": 1, "maxItems": 25, "items": { "type": "string", "minLength": 1, "maxLength": 500 } } }, "additionalProperties": false }, "compounds": { "title": "Supplied compounds", "maxItems": 500, "type": "array", "description": "0-500 exact public identifiers. 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Filters narrow official ChEMBL activity reads and can change dossier size, not the one-event price.", "properties": { "assayTypes": { "type": "array", "title": "Assay types", "description": "Admit 1-6 exact ChEMBL assay type codes; values are retained and can reduce output size.", "minItems": 1, "maxItems": 6, "uniqueItems": true, "items": { "type": "string", "pattern": "^[BFAPTU]$" }, "default": [ "B", "F" ] }, "standardTypes": { "type": "array", "title": "Quantity types", "description": "Admit 1-25 exact source quantity labels such as IC50; values are retained and never treated as synonyms.", "minItems": 1, "maxItems": 25, "uniqueItems": true, "items": { "type": "string", "minLength": 1, "maxLength": 100 }, "default": [ "IC50", "Ki", "Kd", "EC50" ] }, "relationHandling": { "type": "string", "title": "Relation handling", "description": "preserve retains censored operators and refuses pooling; exact_only excludes them.", "enum": [ "preserve", "exact_only" ], "default": "preserve" }, "units": { "type": "array", "title": "Allowed source units", "description": "Admit 1-20 exact source units; no hidden unit conversion is performed.", "minItems": 1, "maxItems": 20, "uniqueItems": true, "items": { "type": "string", "minLength": 1, "maxLength": 100 }, "default": [ "nM" ] }, "organisms": { "type": "array", "title": "Allowed target organisms", "description": "Optionally admit up to 25 exact source organism strings; empty keeps all declared-target organisms.", "maxItems": 25, "uniqueItems": true, "items": { "type": "string", "minLength": 1, "maxLength": 100 }, "default": [] }, "targetScope": { "type": "string", "title": "Target scope", "description": "Version 0.1 can query only exact targets declared in family.targetIdentifiers.", "enum": [ "declared_only" ], "default": "declared_only" } }, "additionalProperties": false }, "includeStructures": { "title": "Include structure evidence", "type": "boolean", "description": "When true, reads up to five declared PDB cross-references and one bounded AlphaFold DB response per target; retained in the archive; does not add events.", "default": true }, "includeBioactivity": { "title": "Include admitted bioactivity", "type": "boolean", "description": "When true, queries only declared ChEMBL target/molecule pairs with explicit filters; up to maxActivities rows are retained; does not add events.", "default": true }, "includeCoordinates": { "title": "Include coordinates", "type": "boolean", "description": "Version 0.1 does not copy coordinate files. Runtime validation requires false.", "default": false }, "maxActivities": { "title": "Maximum admitted activities", "minimum": 1, "maximum": 50000, "type": "integer", "description": "1-50,000 normalized rows; bounds ChEMBL pagination and archive size; does not change the one-event price.", "default": 10000 }, "archiveFormat": { "title": "Archive format", "enum": [ "zip" ], "type": "string", "description": "Version 0.1 supports a deterministic verified ZIP only.", "default": "zip" }, "expertReviewMode": { "title": "Expert review mode", "type": "boolean", "description": "Required for prepublication candidate builds. Review notes are never inserted into customer archives before approval.", "default": true } } }, "runsResponseSchema": { "type": "object", "properties": { "data": { "type": "object", "properties": { "id": { "type": "string" }, "actId": { "type": "string" }, "userId": { "type": "string" }, "startedAt": { "type": "string", "format": "date-time", "example": "2025-01-08T00:00:00.000Z" }, "finishedAt": { "type": "string", "format": "date-time", "example": "2025-01-08T00:00:00.000Z" }, "status": { "type": "string", "example": "READY" }, "meta": { "type": "object", "properties": { "origin": { "type": "string", "example": "API" }, "userAgent": { "type": "string" } } }, "stats": { "type": "object", "properties": { "inputBodyLen": { "type": "integer", "example": 2000 }, "rebootCount": { "type": "integer", "example": 0 }, "restartCount": { "type": "integer", "example": 0 }, "resurrectCount": { "type": "integer", "example": 0 }, "computeUnits": { "type": "integer", "example": 0 } } }, "options": { "type": "object", "properties": { "build": { "type": "string", "example": "latest" }, "timeoutSecs": { "type": "integer", "example": 300 }, "memoryMbytes": { "type": "integer", "example": 1024 }, "diskMbytes": { "type": "integer", "example": 2048 } } }, "buildId": { "type": "string" }, "defaultKeyValueStoreId": { "type": "string" }, "defaultDatasetId": { "type": "string" }, "defaultRequestQueueId": { "type": "string" }, "buildNumber": { "type": "string", "example": "1.0.0" }, "containerUrl": { "type": "string" }, "usage": { "type": "object", "properties": { "ACTOR_COMPUTE_UNITS": { "type": "integer", "example": 0 }, "DATASET_READS": { "type": "integer", "example": 0 }, "DATASET_WRITES": { "type": "integer", "example": 0 }, "KEY_VALUE_STORE_READS": { "type": "integer", "example": 0 }, "KEY_VALUE_STORE_WRITES": { "type": "integer", "example": 1 }, "KEY_VALUE_STORE_LISTS": { "type": "integer", "example": 0 }, "REQUEST_QUEUE_READS": { "type": "integer", "example": 0 }, "REQUEST_QUEUE_WRITES": { "type": "integer", "example": 0 }, "DATA_TRANSFER_INTERNAL_GBYTES": { "type": "integer", "example": 0 }, "DATA_TRANSFER_EXTERNAL_GBYTES": { "type": "integer", "example": 0 }, "PROXY_RESIDENTIAL_TRANSFER_GBYTES": { "type": "integer", "example": 0 }, "PROXY_SERPS": { "type": "integer", "example": 0 } } }, "usageTotalUsd": { "type": "number", "example": 0.00005 }, "usageUsd": { "type": "object", "properties": { "ACTOR_COMPUTE_UNITS": { "type": "integer", "example": 0 }, "DATASET_READS": { "type": "integer", "example": 0 }, "DATASET_WRITES": { "type": "integer", "example": 0 }, "KEY_VALUE_STORE_READS": { "type": "integer", "example": 0 }, "KEY_VALUE_STORE_WRITES": { "type": "number", "example": 0.00005 }, "KEY_VALUE_STORE_LISTS": { "type": "integer", "example": 0 }, "REQUEST_QUEUE_READS": { "type": "integer", "example": 0 }, "REQUEST_QUEUE_WRITES": { "type": "integer", "example": 0 }, "DATA_TRANSFER_INTERNAL_GBYTES": { "type": "integer", "example": 0 }, "DATA_TRANSFER_EXTERNAL_GBYTES": { "type": "integer", "example": 0 }, "PROXY_RESIDENTIAL_TRANSFER_GBYTES": { "type": "integer", "example": 0 }, "PROXY_SERPS": { "type": "integer", "example": 0 } } } } } } } } } }